diff --git a/lecture_material/23-clustering/README.txt b/lecture_material/23-clustering/README.txt deleted file mode 100644 index 6ae4cc8e9c27aa0ab01800433acdf702b1a9c29d..0000000000000000000000000000000000000000 --- a/lecture_material/23-clustering/README.txt +++ /dev/null @@ -1,3 +0,0 @@ -SOURCES: - - variants.csv: https://covdb.stanford.edu/page/mutation-compare/#sars-cov-2.variants.tracking.sites - - capital.jpg: https://en.wikipedia.org/wiki/Madison,_Wisconsin diff --git a/lecture_material/23-clustering/variants.csv b/lecture_material/23-clustering/variants.csv deleted file mode 100644 index c26f1f12b5cef7e8d540968603cf4adea36b1d32..0000000000000000000000000000000000000000 --- a/lecture_material/23-clustering/variants.csv +++ /dev/null @@ -1,63 +0,0 @@ -Variant,F 306,R 346,V 367,P 384,Q 414,K 417,N 439,N 440,Y 449,N 450,L 452,S 477,T 478,V 483,E 484,F 490,S 494,N 501,E 516 -R.1,,,,,,,,,,,,,,,K,,,, -P.3,,,,,,,,,,,,,,,K,,,Y, -P.2,,,,,,,,,,,,,,,K,,,, -C.36.3,,S,,,,,,,,,R,,,,,,,, -C.36+L452R,,,,,,,,,,,R,,,,,,,, -C.16,,,,,,,,,,,R,,,,,,,, -C.1.2,,,,,,,,,H,,,,,,K,,,Y, -B.1.620,,,,,,,,,,,,N,,,K,,,, -B.1.619,,,,,,,,K,,,,,,,K,,,, -B.1.617.3,,,,,,,,,,,R,,,,Q,,,, -B.1.616,,,,,,,,,,,,,,A,,,,, -B.1.466.2,,,,,,,K,,,,,,,,,,,, -B.1.429,,,,,,,,,,,R,,,,,,,, -B.1.427,,,,,,,,,,,R,,,,,,,, -B.1.214.2,,,,,K,,,,,K,,,,,,,,, -B.1.1.519,,,,,,,,,,,,,K,,,,,, -B.1.1.318,,,,,,,,,,,,,,,K,,,, -AV.1,,,,,,,K,,,,,,,,K,,,, -AT.1,,,,,,,,,,,,,,,K,,,, -A.28,,,,,,,,,,,,,,,,,,T, -A.27,,,,,,,,,,,R,,,,,,,Y, -A.23.1+E484K,,,F,,,,,,,,,,,,K,,,, -B.1.621,,K,,,,,,,,,,,,,K,,,Y, -C.37,,,,,,,,,,,Q,,,,,S,,, -B.1.617.1,,,,,,,,,,,R,,,,Q,,,, -B.1.526,,,,,,,,,,,,,,,K,,,, -P.1.2,,,,,,T,,,,,,,,,K,,,Y, -P.1.1,,,,,,T,,,,,,,,,K,,,Y, -P.1+P681H,,,,,,T,,,,,,,,,K,,,Y, -P.1,,,,,,T,,,,,,,,,K,,,Y, -B.1.525,,,,,,,,,,,,,,,K,,,, -B.1.617.2+Q613H,,,,,,,,,,,R,,K,,,,,, -B.1.617.2+K417N,,,,,,N,,,,,R,,K,,,,,, -B.1.617.2+E484Q,,,,,,,,,,,R,,K,,Q,,,, -B.1.617.2,,,,,,,,,,,R,,K,,,,,, -AY.9,,,,,,,,,,,R,,K,,,,,, -AY.8,,,,,,,,,,,R,,K,,,,,, -AY.7,,,,,,,,,,,R,,K,,,,,, -AY.6,,,,,,,,,,,R,,K,,,,,, -AY.5,,,,,,,,,,,R,,K,,,,,, -AY.4,,,,,,,,,,,R,,K,,,,,, -AY.3,,,,,,,,,,,R,,K,,,,,, -AY.2,,,,,,N,,,,,R,,K,,,,,, -AY.12,,,,,,,,,,,R,,K,,,,,, -AY.11,,,,,,,,,,,R,,K,,,,,, -AY.10,,,,,,,,,,,R,,,,,,,, -AY.1,,,,,,N,,,,,R,,K,,,,,, -B.1.351.3,,,,,,N,,,,,,,,,K,,,Y, -B.1.351.2,,,,,,N,,,,,,,,,K,,,Y, -B.1.351+P384L,,,,L,,N,,,,,,,,,K,,,Y, -B.1.351+L18F,,,,,,N,,,,,,,,,K,,,Y, -B.1.351+E516Q,,,,,,N,,,,,,,,,K,,,Y,Q -B.1.351,,,,,,N,,,,,,,,,K,,,Y, -Q.4,,,,,,,,,,,,,,,,,,Y, -Q.3,,,,,,,,,,,,,,,,,,Y, -Q.2,,,,,,,,,,,,,,,,,,Y, -Q.1,,,,,,,,,,,,,,,,,,Y, -B.1.1.7+S494P,,,,,,,,,,,,,,,,,P,Y, -B.1.1.7+L452R,,,,,,,,,,,R,,,,,,,Y, -B.1.1.7+E484K,,,,,,,,,,,,,,,K,,,Y, -B.1.1.7,,,,,,,,,,,,,,,,,,Y, -B.1.1.523,L,,,,,,,,,,,,,,K,,P,, \ No newline at end of file