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README.md

bphon-releases is the landing page for the software releases of the BPHON program

Description

BPHON is a plugin for ChimeraX that allows one to take molecular structures and synthetically generate a nmrPipe FT2 file that predicts NMR peak locations.

BPHON was designed by the team at NMRFAM at the University of Wisconsin at Madison. Development began in 2023. It is freely available for use.

Download

Download the latest release package: LINK1

Earlier version links:

LINK2
LINK3
etc

Install instructions

Install ChimeraX on your computer

Go <a href='https://www.cgl.ucsf.edu/chimerax/download.html'>[HERE]</a>

Download a version greater than or equal to 1.7

Install it using instructions at that site

Install ShiftX2 on your computer

Visit this link: <a href='https://weberdak.github.io/traj2nmr/html/source/installation.html#shiftx2'>[Installing SHIFTX2]</a>

Read the instructions on how to install ShiftX2

Install it (if possible, not in a virtual environment) 

DO NOT INSTALL ANYTHING ELSE MENTIONED IN THOSE INSTRUCTIONS

  For instance stop following the install instructions when
  the discussion gets to SPARTA+

Install BPHON in ChimeraX

start up ChimeraX

in the command window type "devel install path-to-bphon/chimerax-plugin/tut_tool-qt"

It will go into the Tools :: General menu

Note: If you ever need to uninstall BPHON from chimerax do this:

  toolshed uninstall ChimeraX-BphonTool

  to be safe exit and restart chimerax after doing so

Once BPHON has been installed try running it via the Tools :: General menu entry

  The first time you launch BPHON you will get an error dialog related to the
    "traj2nmr" package not being found.

  Just close the dialog and restart chimerax

  Once again launch BPHON via the Tools :: General menu entry

  A UI will be embedded on the lower right pane of ChimeraX and BPHON is ready
     for use.

DOI

License